synthaser
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A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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P
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R
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S
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T
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V
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W
A
accession (synthaser.models.Domain attribute)
add_sequences() (synthaser.models.SynthaseContainer method)
append() (synthaser.models.SynthaseContainer method)
B
bitscore (synthaser.models.Domain attribute)
build_dict() (in module synthaser.grouping)
C
check() (in module synthaser.ncbi)
choose_representative_domain() (in module synthaser.results)
classification (synthaser.models.Synthase attribute)
classify() (in module synthaser.classify)
contains() (synthaser.models.Synthase method)
count() (in module synthaser.fasta)
create() (in module synthaser.fasta)
CustomHandler (class in synthaser.plot)
D
do_GET() (synthaser.plot.CustomHandler method)
Domain (class in synthaser.models)
domain (synthaser.models.Domain attribute)
domain_from_row() (in module synthaser.results)
domains (synthaser.classify.Rule attribute)
(synthaser.models.Synthase attribute)
E
efetch_sequences() (in module synthaser.ncbi)
end (synthaser.models.Domain attribute)
evaluate() (synthaser.classify.Rule method)
evaluator (synthaser.classify.Rule attribute)
evalue (synthaser.models.Domain attribute)
extend() (synthaser.models.SynthaseContainer method)
extract_all_domains() (synthaser.models.Synthase method)
extract_domains() (synthaser.models.Synthase method)
(synthaser.models.SynthaseContainer method)
extract_synthases() (synthaser.models.SynthaseContainer method)
F
filter_domains() (in module synthaser.results)
filter_results() (in module synthaser.results)
filters (synthaser.classify.Rule attribute)
from_sequences() (synthaser.models.SynthaseContainer class method)
G
get_classification_paths() (in module synthaser.grouping)
get_domain_index() (in module synthaser.classify)
get_program_path() (in module synthaser.rpsblast)
get_results() (in module synthaser.ncbi)
graph (synthaser.classify.RuleGraph attribute)
group_overlapping_hits() (in module synthaser.results)
group_synthases() (in module synthaser.grouping)
H
header (synthaser.models.Synthase attribute)
history() (in module synthaser.search)
I
is_fragmented_domain() (in module synthaser.results)
iter_annotation_groups() (in module synthaser.grouping)
iter_nested_keys() (in module synthaser.grouping)
L
launch() (in module synthaser.ncbi)
load_domains() (in module synthaser.results)
log_message() (synthaser.plot.CustomHandler method)
M
merge_dicts() (in module synthaser.grouping)
N
name (synthaser.classify.Rule attribute)
P
parse() (in module synthaser.results)
parse_cdsearch() (in module synthaser.results)
parse_rpsbproc() (in module synthaser.results)
plot_synthases() (in module synthaser.plot)
prepare_input() (in module synthaser.search)
R
rename_domains() (synthaser.classify.Rule method)
retrieve() (in module synthaser.ncbi)
rpsblast() (in module synthaser.rpsblast)
rpsbproc() (in module synthaser.rpsblast)
Rule (class in synthaser.classify)
RuleGraph (class in synthaser.classify)
rules (synthaser.classify.RuleGraph attribute)
S
satisfied_by() (synthaser.classify.Rule method)
save_html() (in module synthaser.plot)
search() (in module synthaser.rpsblast)
(in module synthaser.search)
sequence (synthaser.models.Synthase attribute)
serve_html() (in module synthaser.plot)
set_search_params() (in module synthaser.ncbi)
slice() (synthaser.models.Domain method)
start (synthaser.models.Domain attribute)
superfamily (synthaser.models.Domain attribute)
Synthase (class in synthaser.models)
SynthaseContainer (class in synthaser.models)
synthaser.classify (module)
synthaser.fasta (module)
synthaser.grouping (module)
synthaser.models (module)
synthaser.ncbi (module)
synthaser.plot (module)
synthaser.results (module)
synthaser.rpsblast (module)
synthaser.search (module)
T
to_long() (synthaser.models.SynthaseContainer method)
traverse_graph() (in module synthaser.classify)
type (synthaser.models.Domain attribute)
V
valid_family() (synthaser.classify.Rule method)
valid_order() (synthaser.classify.Rule method)
W
wrap() (in module synthaser.fasta)
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