User guide

• Installation
  • Python version
  • Dependencies
  • Other dependencies
  • Installation
  • Installing RPS-BLAST and rpsbproc
• Quickstart
  • Pre-search configuration using the config module
  • Running a synthaser search using the search module
  • The synthaser plot
• Creating custom rule sets
  • Identifying domain ‘islands’
  • Creating domain types
  • Creating classification rules
  • Classification rule evaluation hierarchy
  • Using the rule file
• Miscellaneous modules
  • getdb
  • getseq
  • extract
  • genbank